PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100272460061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 319aa    MW: 35834.9 Da    PI: 9.5618
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100272460061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.4e-1357101150
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaar 50 
                                   s+y+GV++++++grW+++I+d      + k+++lg f ta  Aa aai++r
  Ote100272460061|100272460061  57 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFATAHAAAWAAIKFR 101
                                   78*******************......55********************98 PP

2AP244.73.3e-14145195155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Ote100272460061|100272460061 145 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 195
                                   89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.08E-1057111IPR016177DNA-binding domain
PfamPF008479.9E-657101IPR001471AP2/ERF domain
PROSITE profilePS5103211.20658110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-958110IPR001471AP2/ERF domain
SMARTSM003802.0E-2158116IPR001471AP2/ERF domain
CDDcd000189.57E-25145205No hitNo description
SuperFamilySSF541712.55E-17145205IPR016177DNA-binding domain
PfamPF008477.0E-10145195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-17146204IPR001471AP2/ERF domain
SMARTSM003807.4E-31146209IPR001471AP2/ERF domain
PROSITE profilePS5103215.461146203IPR001471AP2/ERF domain
PRINTSPR003672.1E-6147158IPR001471AP2/ERF domain
PRINTSPR003672.1E-6185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
METVGGGGMP EFPRAHWVGV KFCQTELHGG GGNAILGKEA AAQPLKKSRR GPRSRSSQYR  60
GVTFYRRTGR WESHIWDCGK QVYLGGFATA HAAAWAAIKF RGVDADINFS LEDYEDDLKQ  120
MSNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEI  180
EAARAYDKAA IKCNGKEAVT NFDASIYDDE LKSADLSLGS SVSRIDGHES SENPWRLRSG  240
QHQRRRDAYS ENETLQLLSQ THLHSPSSFN PSNRFGRQFD AHFISSHNYQ QQQQFHELGG  300
ARNAGGQVFL SLEMNSNGK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099111.11e-130PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotP479271e-116AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLQ84U241e-126Q84U24_ANTMA; LIPLESS1
STRINGVIT_07s0031g00220.t011e-123(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365